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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1avd BTN Avidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1avd BTNAvidin / 1.096
2c4i BTNAvidin / 0.770
1stp BTNStreptavidin / 0.734
2avi BTNAvidin / 0.734
3ew2 BTNHypothetical conserved protein / 0.732
2y3f BTNStreptavidin / 0.728
4z28 BTNHoefavidin / 0.728
2rtf BTNStreptavidin / 0.722
1lcw SHMStreptavidin / 0.719
1swg BTNStreptavidin / 0.718
4gda BTNStreptavidin / 0.715
2rtg BTNStreptavidin / 0.713
2uz2 BTNAvd protein / 0.713
3rdo BTNStreptavidin / 0.713
1swr BTNStreptavidin / 0.710
1swd BTNStreptavidin / 0.708
2rtd BTNStreptavidin / 0.704
3wyq BTNStreptavidin / 0.704
2izg BTNStreptavidin / 0.702
2zsc BTNTamavidin2 / 0.698
2uyw BTNAvd protein / 0.693
3ry2 BTNStreptavidin / 0.689
3wyp BSOStreptavidin / 0.687
2izh BTNStreptavidin / 0.684
2jgs BTNAvidin / 0.684
2rte BTNStreptavidin / 0.683
3t2w BTNAvidin/streptavidin / 0.680
1i9h BNIStreptavidin / 0.679
1swe BTNStreptavidin / 0.679
1luq BTNStreptavidin / 0.678
2izj BTNStreptavidin / 0.678
4ggz BTNBll1558 protein / 0.678
2izf BTNStreptavidin / 0.668
2izi BTNStreptavidin / 0.668
1ldq SHMAvidin / 0.667
1swt BTNStreptavidin / 0.664
1swp BTQStreptavidin / 0.662
4bj8 BTNAvidin / 0.662
4bx7 B4FStreptavidin / 0.662
4yvb BTNStreptavidin / 0.659
3vhm NPKAvidin / 0.651