Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1an5 CB3 Thymidylate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1an5 CB3Thymidylate synthase / 1.088
1fwm CB3Thymidylate synthase / 0.810
4knz CB3Thymidylate synthase / 0.700
1kce CB3Thymidylate synthase / 0.699
1tdu CB3Thymidylate synthase / 0.689
4gev CB3Thymidylate synthase / 0.685
1nce CB3Thymidylate synthase / 0.679
4isk 1JYThymidylate synthase / 0.678
1tys DHFThymidylate synthase / 0.671
1dna CB3Thymidylate synthase / 0.669
1bq1 CB3Thymidylate synthase / 0.667
2fto CB3Thymidylate synthase / 0.665
1trg CB3Thymidylate synthase / 0.664
2bbq PFGThymidylate synthase / 0.664
1zpr CB3Thymidylate synthase / 0.659
2tsc CB3Thymidylate synthase / 0.655
1aiq CB3Thymidylate synthase / 0.651