2.530 Å
X-ray
2016-05-31
| Name: | LIM domain kinase 1 |
|---|---|
| ID: | LIMK1_HUMAN |
| AC: | P53667 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| L | 92 % |
| C | 8 % |
| B-Factor: | 88.524 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 36 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.547 | 617.625 |
| % Hydrophobic | % Polar |
|---|---|
| 34.97 | 65.03 |
| According to VolSite | |

| HET Code: | AGS |
|---|---|
| Formula: | C10H14N5O12P3S |
| Molecular weight: | 521.231 g/mol |
| DrugBank ID: | DB02930 |
| Buried Surface Area: | 47.24 % |
| Polar Surface area: | 329.24 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -14.4348 | 40.2627 | 24.2027 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CB | LEU- 345 | 4.18 | 0 | Hydrophobic |
| O2A | NZ | LYS- 368 | 2.97 | 166.6 | H-Bond (Protein Donor) |
| O2A | NZ | LYS- 368 | 2.97 | 0 | Ionic (Protein Cationic) |
| N6 | O | GLU- 414 | 3.19 | 123.26 | H-Bond (Ligand Donor) |
| C2' | CG2 | THR- 420 | 3.74 | 0 | Hydrophobic |
| O3' | O | HIS- 464 | 2.71 | 147.99 | H-Bond (Ligand Donor) |
| C2' | CD2 | LEU- 467 | 4.14 | 0 | Hydrophobic |