2.530 Å
X-ray
2016-05-31
Name: | LIM domain kinase 1 |
---|---|
ID: | LIMK1_HUMAN |
AC: | P53667 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
L | 92 % |
C | 8 % |
B-Factor: | 88.524 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.547 | 617.625 |
% Hydrophobic | % Polar |
---|---|
34.97 | 65.03 |
According to VolSite |
HET Code: | AGS |
---|---|
Formula: | C10H14N5O12P3S |
Molecular weight: | 521.231 g/mol |
DrugBank ID: | DB02930 |
Buried Surface Area: | 47.24 % |
Polar Surface area: | 329.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-14.4348 | 40.2627 | 24.2027 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CB | LEU- 345 | 4.18 | 0 | Hydrophobic |
O2A | NZ | LYS- 368 | 2.97 | 166.6 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 368 | 2.97 | 0 | Ionic (Protein Cationic) |
N6 | O | GLU- 414 | 3.19 | 123.26 | H-Bond (Ligand Donor) |
C2' | CG2 | THR- 420 | 3.74 | 0 | Hydrophobic |
O3' | O | HIS- 464 | 2.71 | 147.99 | H-Bond (Ligand Donor) |
C2' | CD2 | LEU- 467 | 4.14 | 0 | Hydrophobic |