2.100 Å
X-ray
2016-03-01
| Name: | Protein polybromo-1 |
|---|---|
| ID: | PB1_HUMAN |
| AC: | Q86U86 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 22 % |
| B | 78 % |
| B-Factor: | 21.304 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.498 | 1204.875 |
| % Hydrophobic | % Polar |
|---|---|
| 59.94 | 40.06 |
| According to VolSite | |

| HET Code: | LU2 |
|---|---|
| Formula: | C15H9O6 |
| Molecular weight: | 285.228 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 70.4 % |
| Polar Surface area: | 110.05 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 9.15524 | -23.727 | -28.6408 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C13 | CD1 | ILE- 683 | 4.22 | 0 | Hydrophobic |
| C13 | CD1 | ILE- 683 | 3.9 | 0 | Hydrophobic |
| C15 | CG1 | ILE- 683 | 3.35 | 0 | Hydrophobic |
| O1 | O | PHE- 684 | 2.69 | 140.54 | H-Bond (Ligand Donor) |
| C2 | CB | PHE- 684 | 4.4 | 0 | Hydrophobic |
| C3 | CD2 | LEU- 687 | 3.56 | 0 | Hydrophobic |
| C15 | CG | PRO- 688 | 3.6 | 0 | Hydrophobic |
| C10 | CD1 | LEU- 693 | 4.4 | 0 | Hydrophobic |
| C11 | CD2 | LEU- 693 | 4.11 | 0 | Hydrophobic |
| O2 | OH | TYR- 696 | 2.6 | 148.29 | H-Bond (Protein Donor) |
| C2 | CB | ASP- 705 | 4.3 | 0 | Hydrophobic |
| C3 | CG | MET- 731 | 3.96 | 0 | Hydrophobic |
| C4 | CB | ALA- 735 | 3.91 | 0 | Hydrophobic |
| O3 | ND2 | ASN- 739 | 3.08 | 145.66 | H-Bond (Protein Donor) |
| C14 | CD2 | LEU- 744 | 3.66 | 0 | Hydrophobic |
| C11 | CD1 | ILE- 745 | 3.88 | 0 | Hydrophobic |