2.300 Å
X-ray
2016-01-27
Name: | Probable sugar kinase |
---|---|
ID: | Q31KC7_SYNE7 |
AC: | Q31KC7 |
Organism: | Synechococcus elongatus |
Reign: | Bacteria |
TaxID: | 1140 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 31.286 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.596 | 394.875 |
% Hydrophobic | % Polar |
---|---|
49.57 | 50.43 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 44.96 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-13.1776 | -3.84426 | 7.28758 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | OG | SER- 243 | 2.7 | 137.83 | H-Bond (Protein Donor) |
O2B | N | SER- 243 | 2.79 | 165.23 | H-Bond (Protein Donor) |
O3' | O | GLY- 281 | 2.95 | 139.21 | H-Bond (Ligand Donor) |
C2' | CD1 | LEU- 293 | 4.36 | 0 | Hydrophobic |
O2A | N | GLY- 376 | 3.23 | 138.47 | H-Bond (Protein Donor) |
N1 | ND2 | ASN- 380 | 3.09 | 159.65 | H-Bond (Protein Donor) |
O2' | O | HOH- 623 | 2.84 | 168.38 | H-Bond (Ligand Donor) |