sc-PDB

List of CHEMBLId :

This value allows a number of roughly comparable measures of half-maximal response concentration/potency/affinity to be compared on a negative logarithmic scale (e.g., an IC50 measurement of 1nM would have a pChEMBL value of 9).

Uniprot Annotation

Name:	Single-stranded-DNA-specific exonuclease
ID:	D0EM60_DEIRD
AC:	D0EM60
Organism:	Deinococcus radiodurans
Reign:	Bacteria
TaxID:	1299
EC Number:	/

---

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

---

Ligand binding site composition:

B-Factor:	56.158
Number of residues:	21
Including
Standard Amino Acids:	20
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

---

Cavity properties

Ligandability	Volume (Å3)
0.691	243.000

% Hydrophobic	% Polar
66.67	33.33
According to VolSite

HET Code:	ALA_ASP_LEU_PRO_PHE
Formula:	C27H38N5O8
Molecular weight:	560.619 g/mol
DrugBank ID:	-
Buried Surface Area:	38.3 %
Polar Surface area:	215.5 Å2

Number of
H-Bond Acceptors:	8
H-Bond Donors:	4
Rings:	2
Aromatic rings:	1
Anionic atoms:	2
Cationic atoms:	1
Rule of Five Violation:	2
Rotatable Bonds:	14

---

Mass center Coordinates

X	Y	Z
40.9583	365.475	464.459

• 2D View
• 3D View