2.070 Å
X-ray
2015-09-21
| Name: | CCR4-NOT transcription complex subunit 6-like |
|---|---|
| ID: | CNO6L_HUMAN |
| AC: | Q96LI5 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.1.13.4 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 38.937 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.709 | 783.000 |
| % Hydrophobic | % Polar |
|---|---|
| 43.53 | 56.47 |
| According to VolSite | |

| HET Code: | C5P |
|---|---|
| Formula: | C9H12N3O8P |
| Molecular weight: | 321.181 g/mol |
| DrugBank ID: | DB03403 |
| Buried Surface Area: | 59.56 % |
| Polar Surface area: | 190.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -32.8048 | 14.578 | 15.5987 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1P | NE2 | HIS- 360 | 3.02 | 159.03 | H-Bond (Protein Donor) |
| C1' | CE3 | TRP- 363 | 4.2 | 0 | Hydrophobic |
| O3P | OD2 | ASP- 410 | 2.67 | 164.64 | H-Bond (Protein Donor) |
| O1P | ND2 | ASN- 412 | 3.45 | 166.45 | H-Bond (Protein Donor) |
| O3' | OD1 | ASN- 480 | 2.77 | 142.36 | H-Bond (Ligand Donor) |
| C3' | CD2 | PHE- 485 | 3.62 | 0 | Hydrophobic |
| C2' | CG | PHE- 485 | 3.6 | 0 | Hydrophobic |
| C5' | CD1 | ILE- 489 | 4.01 | 0 | Hydrophobic |
| O3P | NE2 | HIS- 530 | 3.27 | 124.74 | H-Bond (Protein Donor) |
| O2P | NE2 | HIS- 530 | 3.34 | 161.31 | H-Bond (Protein Donor) |