2.070 Å
X-ray
2015-09-21
Name: | CCR4-NOT transcription complex subunit 6-like |
---|---|
ID: | CNO6L_HUMAN |
AC: | Q96LI5 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.1.13.4 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 38.937 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.709 | 783.000 |
% Hydrophobic | % Polar |
---|---|
43.53 | 56.47 |
According to VolSite |
HET Code: | C5P |
---|---|
Formula: | C9H12N3O8P |
Molecular weight: | 321.181 g/mol |
DrugBank ID: | DB03403 |
Buried Surface Area: | 59.56 % |
Polar Surface area: | 190.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-32.8048 | 14.578 | 15.5987 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1P | NE2 | HIS- 360 | 3.02 | 159.03 | H-Bond (Protein Donor) |
C1' | CE3 | TRP- 363 | 4.2 | 0 | Hydrophobic |
O3P | OD2 | ASP- 410 | 2.67 | 164.64 | H-Bond (Protein Donor) |
O1P | ND2 | ASN- 412 | 3.45 | 166.45 | H-Bond (Protein Donor) |
O3' | OD1 | ASN- 480 | 2.77 | 142.36 | H-Bond (Ligand Donor) |
C3' | CD2 | PHE- 485 | 3.62 | 0 | Hydrophobic |
C2' | CG | PHE- 485 | 3.6 | 0 | Hydrophobic |
C5' | CD1 | ILE- 489 | 4.01 | 0 | Hydrophobic |
O3P | NE2 | HIS- 530 | 3.27 | 124.74 | H-Bond (Protein Donor) |
O2P | NE2 | HIS- 530 | 3.34 | 161.31 | H-Bond (Protein Donor) |