2.950 Å
X-ray
2015-07-08
Name: | Stimulator of interferon genes protein |
---|---|
ID: | STING_NEMVE |
AC: | A7SLZ2 |
Organism: | Nematostella vectensis |
Reign: | Eukaryota |
TaxID: | 45351 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 48 % |
B | 52 % |
B-Factor: | 85.337 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.046 | 1009.125 |
% Hydrophobic | % Polar |
---|---|
45.15 | 54.85 |
According to VolSite |
HET Code: | 2BA |
---|---|
Formula: | C20H22N10O12P2 |
Molecular weight: | 656.396 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 33.52 % |
Polar Surface area: | 334.95 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 20 |
H-Bond Donors: | 4 |
Rings: | 7 |
Aromatic rings: | 4 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-21.6945 | -37.4784 | -2.83932 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CB | ARG- 278 | 4.39 | 0 | Hydrophobic |
C1' | CG | ARG- 278 | 4.47 | 0 | Hydrophobic |
C5'1 | CB | ARG- 278 | 4.45 | 0 | Hydrophobic |
DuAr | CZ | ARG- 278 | 3.72 | 20.55 | Pi/Cation |
DuAr | CZ | ARG- 278 | 3.96 | 29.18 | Pi/Cation |
O1P | O | HIS- 279 | 2.76 | 154.49 | H-Bond (Ligand Donor) |
O1P1 | O | HIS- 279 | 2.57 | 151.51 | H-Bond (Ligand Donor) |
O1P1 | N | HIS- 279 | 2.67 | 148.56 | H-Bond (Protein Donor) |