2.430 Å
X-ray
2015-06-11
Name: | Beta-ketothiolase |
---|---|
ID: | A0QUH3_MYCS2 |
AC: | A0QUH3 |
Organism: | Mycobacterium smegmatis 155) |
Reign: | Bacteria |
TaxID: | 246196 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
K | 95 % |
L | 5 % |
B-Factor: | 39.936 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 38 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.606 | 860.625 |
% Hydrophobic | % Polar |
---|---|
39.61 | 60.39 |
According to VolSite |
HET Code: | COA |
---|---|
Formula: | C21H32N7O16P3S |
Molecular weight: | 763.502 g/mol |
DrugBank ID: | DB01992 |
Buried Surface Area: | 43.48 % |
Polar Surface area: | 426.11 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 21 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 18 |
X | Y | Z |
---|---|---|
64.6857 | -93.9762 | 42.8255 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
S1P | SG | CYS- 90 | 3.31 | 0 | Hydrophobic |
O1A | CZ | ARG- 136 | 3.01 | 0 | Ionic (Protein Cationic) |
S1P | SD | MET- 163 | 3.98 | 0 | Hydrophobic |
CAP | CD1 | LEU- 164 | 4.34 | 0 | Hydrophobic |
DuAr | CZ | ARG- 226 | 3.73 | 24.08 | Pi/Cation |
C1B | CD2 | LEU- 237 | 4.06 | 0 | Hydrophobic |
CEP | CB | ALA- 252 | 3.52 | 0 | Hydrophobic |
C5B | CB | ALA- 252 | 3.56 | 0 | Hydrophobic |
N8P | O | SER- 256 | 3.19 | 124.58 | H-Bond (Ligand Donor) |
CDP | CB | GLN- 258 | 4.18 | 0 | Hydrophobic |
C6P | CG | GLN- 258 | 3.99 | 0 | Hydrophobic |
O9P | NE2 | GLN- 258 | 2.96 | 123 | H-Bond (Protein Donor) |
S1P | SD | MET- 297 | 3.85 | 0 | Hydrophobic |
C2P | CB | ALA- 327 | 3.5 | 0 | Hydrophobic |
C2P | CZ | PHE- 328 | 4.22 | 0 | Hydrophobic |
S1P | SG | CYS- 390 | 4.26 | 0 | Hydrophobic |
N4P | O | HOH- 627 | 3.13 | 157.9 | H-Bond (Ligand Donor) |
N1A | O | HOH- 652 | 2.9 | 161.14 | H-Bond (Protein Donor) |