2.750 Å
X-ray
2015-05-26
| Name: | Mitochondrial poly(A) polymerase |
|---|---|
| ID: | F1NBW0_CHICK |
| AC: | F1NBW0 |
| Organism: | Gallus gallus |
| Reign: | Eukaryota |
| TaxID: | 9031 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 70.089 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.888 | 1107.000 |
| % Hydrophobic | % Polar |
|---|---|
| 38.72 | 61.28 |
| According to VolSite | |

| HET Code: | UTP |
|---|---|
| Formula: | C9H11N2O15P3 |
| Molecular weight: | 480.109 g/mol |
| DrugBank ID: | DB04005 |
| Buried Surface Area: | 40.42 % |
| Polar Surface area: | 299.67 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 15 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -24.0689 | 1.93297 | 0.0602759 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CE2 | PHE- 224 | 3.77 | 0 | Hydrophobic |
| O2G | OG | SER- 226 | 2.56 | 138.21 | H-Bond (Protein Donor) |
| C1' | CB | ALA- 327 | 4.22 | 0 | Hydrophobic |
| C2' | CB | CYS- 330 | 4.4 | 0 | Hydrophobic |
| O3G | ND2 | ASN- 371 | 3.39 | 137.26 | H-Bond (Protein Donor) |
| C2' | CE1 | PHE- 372 | 4.02 | 0 | Hydrophobic |
| C3' | CD1 | PHE- 372 | 4.42 | 0 | Hydrophobic |
| O1B | MG | MG- 1529 | 2.4 | 0 | Metal Acceptor |