2.400 Å
X-ray
2015-05-06
Name: | Lin1840 protein |
---|---|
ID: | Q92AS9_LISIN |
AC: | Q92AS9 |
Organism: | Listeria innocua serovar 6a |
Reign: | Bacteria |
TaxID: | 272626 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 69 % |
B | 31 % |
B-Factor: | 29.425 |
---|---|
Number of residues: | 16 |
Including | |
Standard Amino Acids: | 16 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.654 | 789.750 |
% Hydrophobic | % Polar |
---|---|
43.59 | 56.41 |
According to VolSite |
HET Code: | LGC |
---|---|
Formula: | C6H10O6 |
Molecular weight: | 178.140 g/mol |
DrugBank ID: | DB04564 |
Buried Surface Area: | 45.57 % |
Polar Surface area: | 107.22 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 4 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-13.6606 | -63.6629 | -43.985 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2 | OG1 | THR- 212 | 2.92 | 152 | H-Bond (Ligand Donor) |
O1 | OD2 | ASP- 242 | 2.68 | 175.21 | H-Bond (Protein Donor) |
C6 | CG1 | ILE- 244 | 4.35 | 0 | Hydrophobic |
C4 | CB | TRP- 251 | 3.9 | 0 | Hydrophobic |
C6 | CB | TRP- 251 | 4.39 | 0 | Hydrophobic |
C2 | CD2 | TRP- 251 | 3.97 | 0 | Hydrophobic |
C6 | CB | HIS- 690 | 3.42 | 0 | Hydrophobic |