2.400 Å
X-ray
2015-05-06
| Name: | Lin1840 protein |
|---|---|
| ID: | Q92AS9_LISIN |
| AC: | Q92AS9 |
| Organism: | Listeria innocua serovar 6a |
| Reign: | Bacteria |
| TaxID: | 272626 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 69 % |
| B | 31 % |
| B-Factor: | 29.425 |
|---|---|
| Number of residues: | 16 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.654 | 789.750 |
| % Hydrophobic | % Polar |
|---|---|
| 43.59 | 56.41 |
| According to VolSite | |

| HET Code: | LGC |
|---|---|
| Formula: | C6H10O6 |
| Molecular weight: | 178.140 g/mol |
| DrugBank ID: | DB04564 |
| Buried Surface Area: | 45.57 % |
| Polar Surface area: | 107.22 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 4 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -13.6606 | -63.6629 | -43.985 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2 | OG1 | THR- 212 | 2.92 | 152 | H-Bond (Ligand Donor) |
| O1 | OD2 | ASP- 242 | 2.68 | 175.21 | H-Bond (Protein Donor) |
| C6 | CG1 | ILE- 244 | 4.35 | 0 | Hydrophobic |
| C4 | CB | TRP- 251 | 3.9 | 0 | Hydrophobic |
| C6 | CB | TRP- 251 | 4.39 | 0 | Hydrophobic |
| C2 | CD2 | TRP- 251 | 3.97 | 0 | Hydrophobic |
| C6 | CB | HIS- 690 | 3.42 | 0 | Hydrophobic |