2.300 Å
X-ray
2015-04-24
Name: | Kinesin-like protein KIF11 |
---|---|
ID: | KIF11_HUMAN |
AC: | P52732 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 9 % |
B | 91 % |
B-Factor: | 37.014 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.122 | 607.500 |
% Hydrophobic | % Polar |
---|---|
54.44 | 45.56 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 41.28 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
16.3646 | -7.88715 | 9.545 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | GLY- 108 | 3.2 | 148.16 | H-Bond (Protein Donor) |
O3B | N | GLY- 108 | 3.09 | 120.62 | H-Bond (Protein Donor) |
O2B | OG1 | THR- 112 | 3.3 | 161.18 | H-Bond (Protein Donor) |
O2A | N | PHE- 113 | 3.1 | 146.67 | H-Bond (Protein Donor) |
C5' | CB | PHE- 113 | 4.21 | 0 | Hydrophobic |
C2' | CD1 | PHE- 113 | 3.27 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 113 | 3.76 | 0 | Aromatic Face/Face |
N6 | O | HOH- 791 | 2.96 | 123.86 | H-Bond (Ligand Donor) |