1.130 Å
X-ray
2015-02-10
| Name: | Endothiapepsin |
|---|---|
| ID: | CARP_CRYPA |
| AC: | P11838 |
| Organism: | Cryphonectria parasitica |
| Reign: | Eukaryota |
| TaxID: | 5116 |
| EC Number: | 3.4.23.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 12.896 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.460 | 617.625 |
| % Hydrophobic | % Polar |
|---|---|
| 38.25 | 61.75 |
| According to VolSite | |

| HET Code: | F06 |
|---|---|
| Formula: | C8H10ClN2S |
| Molecular weight: | 201.696 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.66 % |
| Polar Surface area: | 76.91 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 2 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 1.12233 | 8.68608 | 9.18467 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N12 | OD1 | ASP- 35 | 2.94 | 164.21 | H-Bond (Ligand Donor) |
| CL2 | CZ | PHE- 194 | 3.42 | 0 | Hydrophobic |
| CL2 | CD1 | ILE- 217 | 3.8 | 0 | Hydrophobic |
| N12 | OD1 | ASP- 219 | 2.75 | 154.69 | H-Bond (Ligand Donor) |
| C4 | CG2 | ILE- 300 | 3.31 | 0 | Hydrophobic |
| C3 | CG2 | ILE- 302 | 4.13 | 0 | Hydrophobic |
| C8 | CD1 | ILE- 304 | 4.32 | 0 | Hydrophobic |
| C6 | CD1 | ILE- 304 | 3.69 | 0 | Hydrophobic |