2.810 Å
X-ray
2014-09-03
Name: | Rhodopsin kinase |
---|---|
ID: | RK_BOVIN |
AC: | P28327 |
Organism: | Bos taurus |
Reign: | Eukaryota |
TaxID: | 9913 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 87.708 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.931 | 884.250 |
% Hydrophobic | % Polar |
---|---|
40.84 | 59.16 |
According to VolSite |
HET Code: | ANW |
---|---|
Formula: | C16H13N2O4 |
Molecular weight: | 297.285 g/mol |
DrugBank ID: | DB01025 |
Buried Surface Area: | 52.03 % |
Polar Surface area: | 105.34 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-16.5671 | -62.0317 | -7.54177 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAE | CB | LEU- 193 | 4.49 | 0 | Hydrophobic |
CAG | CB | LEU- 193 | 3.98 | 0 | Hydrophobic |
CAH | CD1 | LEU- 193 | 4.06 | 0 | Hydrophobic |
CAJ | CD1 | LEU- 193 | 3.8 | 0 | Hydrophobic |
CAK | CD2 | LEU- 193 | 3.6 | 0 | Hydrophobic |
NAB | O | THR- 265 | 2.88 | 161.3 | H-Bond (Ligand Donor) |
CAJ | CG1 | ILE- 266 | 4.41 | 0 | Hydrophobic |
OAS | N | MET- 267 | 3.32 | 155.17 | H-Bond (Protein Donor) |
CAN | CD1 | LEU- 321 | 3.49 | 0 | Hydrophobic |
CAE | CB | ALA- 478 | 3.3 | 0 | Hydrophobic |
OAU | O | HOH- 705 | 2.98 | 179.96 | H-Bond (Protein Donor) |