2.810 Å
X-ray
2014-09-03
| Name: | Rhodopsin kinase |
|---|---|
| ID: | RK_BOVIN |
| AC: | P28327 |
| Organism: | Bos taurus |
| Reign: | Eukaryota |
| TaxID: | 9913 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 100 % |
| B-Factor: | 87.708 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.931 | 884.250 |
| % Hydrophobic | % Polar |
|---|---|
| 40.84 | 59.16 |
| According to VolSite | |

| HET Code: | ANW |
|---|---|
| Formula: | C16H13N2O4 |
| Molecular weight: | 297.285 g/mol |
| DrugBank ID: | DB01025 |
| Buried Surface Area: | 52.03 % |
| Polar Surface area: | 105.34 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -16.5671 | -62.0317 | -7.54177 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAE | CB | LEU- 193 | 4.49 | 0 | Hydrophobic |
| CAG | CB | LEU- 193 | 3.98 | 0 | Hydrophobic |
| CAH | CD1 | LEU- 193 | 4.06 | 0 | Hydrophobic |
| CAJ | CD1 | LEU- 193 | 3.8 | 0 | Hydrophobic |
| CAK | CD2 | LEU- 193 | 3.6 | 0 | Hydrophobic |
| NAB | O | THR- 265 | 2.88 | 161.3 | H-Bond (Ligand Donor) |
| CAJ | CG1 | ILE- 266 | 4.41 | 0 | Hydrophobic |
| OAS | N | MET- 267 | 3.32 | 155.17 | H-Bond (Protein Donor) |
| CAN | CD1 | LEU- 321 | 3.49 | 0 | Hydrophobic |
| CAE | CB | ALA- 478 | 3.3 | 0 | Hydrophobic |
| OAU | O | HOH- 705 | 2.98 | 179.96 | H-Bond (Protein Donor) |