1.500 Å
X-ray
2014-10-19
| Name: | Uncharacterized protein |
|---|---|
| ID: | Q9KN50_VIBCH |
| AC: | Q9KN50 |
| Organism: | Vibrio cholerae serotype O1 |
| Reign: | Bacteria |
| TaxID: | 243277 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 17.509 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 17 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.219 | 253.125 |
| % Hydrophobic | % Polar |
|---|---|
| 48.00 | 52.00 |
| According to VolSite | |

| HET Code: | ASP_LEU_THR_ARG_PRO |
|---|---|
| Formula: | C25H45N8O8 |
| Molecular weight: | 585.674 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 27.99 % |
| Polar Surface area: | 278.69 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 8 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 2 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 17 |
| X | Y | Z |
|---|---|---|
| 10.0581 | 37.3073 | -12.0182 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CB | CB | ALA- 92 | 4.01 | 0 | Hydrophobic |
| CD1 | CB | ALA- 92 | 3.89 | 0 | Hydrophobic |
| CG2 | CB | ALA- 92 | 4.35 | 0 | Hydrophobic |
| CB | CD2 | TYR- 95 | 4.34 | 0 | Hydrophobic |
| CG2 | CB | TYR- 95 | 4.13 | 0 | Hydrophobic |
| O | NZ | LYS- 134 | 2.86 | 159.1 | H-Bond (Protein Donor) |
| CG2 | CD1 | ILE- 138 | 3.93 | 0 | Hydrophobic |
| O | NH1 | ARG- 141 | 2.68 | 141.14 | H-Bond (Protein Donor) |
| O | NH2 | ARG- 141 | 2.8 | 129.74 | H-Bond (Protein Donor) |
| CD2 | CB | ARG- 141 | 4.35 | 0 | Hydrophobic |
| CD1 | CD2 | LEU- 142 | 3.88 | 0 | Hydrophobic |
| CD2 | CD2 | LEU- 142 | 4.05 | 0 | Hydrophobic |
| CD1 | CE1 | TYR- 149 | 4.13 | 0 | Hydrophobic |
| CD2 | CZ | TYR- 149 | 4.22 | 0 | Hydrophobic |