1.500 Å
X-ray
2014-10-19
Name: | Uncharacterized protein |
---|---|
ID: | Q9KN50_VIBCH |
AC: | Q9KN50 |
Organism: | Vibrio cholerae serotype O1 |
Reign: | Bacteria |
TaxID: | 243277 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.509 |
---|---|
Number of residues: | 17 |
Including | |
Standard Amino Acids: | 17 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.219 | 253.125 |
% Hydrophobic | % Polar |
---|---|
48.00 | 52.00 |
According to VolSite |
HET Code: | ASP_LEU_THR_ARG_PRO |
---|---|
Formula: | C25H45N8O8 |
Molecular weight: | 585.674 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 27.99 % |
Polar Surface area: | 278.69 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 8 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 2 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 17 |
X | Y | Z |
---|---|---|
10.0581 | 37.3073 | -12.0182 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CB | CB | ALA- 92 | 4.01 | 0 | Hydrophobic |
CD1 | CB | ALA- 92 | 3.89 | 0 | Hydrophobic |
CG2 | CB | ALA- 92 | 4.35 | 0 | Hydrophobic |
CB | CD2 | TYR- 95 | 4.34 | 0 | Hydrophobic |
CG2 | CB | TYR- 95 | 4.13 | 0 | Hydrophobic |
O | NZ | LYS- 134 | 2.86 | 159.1 | H-Bond (Protein Donor) |
CG2 | CD1 | ILE- 138 | 3.93 | 0 | Hydrophobic |
O | NH1 | ARG- 141 | 2.68 | 141.14 | H-Bond (Protein Donor) |
O | NH2 | ARG- 141 | 2.8 | 129.74 | H-Bond (Protein Donor) |
CD2 | CB | ARG- 141 | 4.35 | 0 | Hydrophobic |
CD1 | CD2 | LEU- 142 | 3.88 | 0 | Hydrophobic |
CD2 | CD2 | LEU- 142 | 4.05 | 0 | Hydrophobic |
CD1 | CE1 | TYR- 149 | 4.13 | 0 | Hydrophobic |
CD2 | CZ | TYR- 149 | 4.22 | 0 | Hydrophobic |