2.500 Å
X-ray
2014-06-11
| Name: | Reaction center protein L chain |
|---|---|
| ID: | RCEL_RHOSH |
| AC: | P0C0Y8 |
| Organism: | Rhodobacter sphaeroides |
| Reign: | Bacteria |
| TaxID: | 1063 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| H | 4 % |
| L | 88 % |
| M | 8 % |
| B-Factor: | 25.733 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.485 | 391.500 |
| % Hydrophobic | % Polar |
|---|---|
| 73.28 | 26.72 |
| According to VolSite | |

| HET Code: | UQ1 |
|---|---|
| Formula: | C14H18O4 |
| Molecular weight: | 250.290 g/mol |
| DrugBank ID: | DB08689 |
| Buried Surface Area: | 66.89 % |
| Polar Surface area: | 52.6 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 0 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -1.65394 | 28.3773 | -40.8061 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C8 | CD1 | LEU- 189 | 4.23 | 0 | Hydrophobic |
| CM2 | CB | HIS- 190 | 3.89 | 0 | Hydrophobic |
| CM2 | CD2 | LEU- 193 | 3.32 | 0 | Hydrophobic |
| CM3 | CD2 | LEU- 193 | 3.76 | 0 | Hydrophobic |
| CM3 | CB | GLU- 212 | 3.89 | 0 | Hydrophobic |
| CM5 | CD1 | PHE- 216 | 3.69 | 0 | Hydrophobic |
| C7 | CE1 | PHE- 216 | 3.4 | 0 | Hydrophobic |
| CM5 | CB | SER- 223 | 4.4 | 0 | Hydrophobic |
| CM5 | CG2 | ILE- 224 | 3.78 | 0 | Hydrophobic |
| O4 | N | GLY- 225 | 2.85 | 169.67 | H-Bond (Protein Donor) |
| CM3 | CG2 | THR- 226 | 4.5 | 0 | Hydrophobic |
| CM2 | CG1 | ILE- 229 | 4.17 | 0 | Hydrophobic |
| C8 | CD1 | ILE- 229 | 3.65 | 0 | Hydrophobic |