2.500 Å
X-ray
2014-03-26
Name: | Bromodomain protein, putative |
---|---|
ID: | Q8I240_PLAF7 |
AC: | Q8I240 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 48.614 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.125 | 610.875 |
% Hydrophobic | % Polar |
---|---|
54.70 | 45.30 |
According to VolSite |
HET Code: | R78 |
---|---|
Formula: | C28H40N7O3 |
Molecular weight: | 522.662 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 47.2 % |
Polar Surface area: | 104.13 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 3 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-19.9721 | -44.7108 | -69.8657 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C31 | CE2 | PHE- 1215 | 3.59 | 0 | Hydrophobic |
C31 | CE1 | TYR- 1216 | 3.68 | 0 | Hydrophobic |
C10 | CG1 | VAL- 1221 | 3.76 | 0 | Hydrophobic |
C16 | CB | ASN- 1226 | 3.59 | 0 | Hydrophobic |
C10 | CD1 | ILE- 1227 | 3.85 | 0 | Hydrophobic |
C20 | CG1 | ILE- 1227 | 3.73 | 0 | Hydrophobic |
C10 | CG2 | ILE- 1231 | 3.82 | 0 | Hydrophobic |
C10 | CD2 | TYR- 1235 | 4.32 | 0 | Hydrophobic |
C9 | CE2 | PHE- 1277 | 3.69 | 0 | Hydrophobic |
O1 | ND2 | ASN- 1278 | 3.07 | 175.9 | H-Bond (Protein Donor) |
C5 | CD1 | ILE- 1287 | 3.88 | 0 | Hydrophobic |
C12 | CD1 | ILE- 1287 | 4.01 | 0 | Hydrophobic |