2.500 Å
X-ray
2014-03-26
| Name: | Bromodomain protein, putative |
|---|---|
| ID: | Q8I240_PLAF7 |
| AC: | Q8I240 |
| Organism: | Plasmodium falciparum |
| Reign: | Eukaryota |
| TaxID: | 36329 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 48.614 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.125 | 610.875 |
| % Hydrophobic | % Polar |
|---|---|
| 54.70 | 45.30 |
| According to VolSite | |

| HET Code: | R78 |
|---|---|
| Formula: | C28H40N7O3 |
| Molecular weight: | 522.662 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 47.2 % |
| Polar Surface area: | 104.13 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 3 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| -19.9721 | -44.7108 | -69.8657 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C31 | CE2 | PHE- 1215 | 3.59 | 0 | Hydrophobic |
| C31 | CE1 | TYR- 1216 | 3.68 | 0 | Hydrophobic |
| C10 | CG1 | VAL- 1221 | 3.76 | 0 | Hydrophobic |
| C16 | CB | ASN- 1226 | 3.59 | 0 | Hydrophobic |
| C10 | CD1 | ILE- 1227 | 3.85 | 0 | Hydrophobic |
| C20 | CG1 | ILE- 1227 | 3.73 | 0 | Hydrophobic |
| C10 | CG2 | ILE- 1231 | 3.82 | 0 | Hydrophobic |
| C10 | CD2 | TYR- 1235 | 4.32 | 0 | Hydrophobic |
| C9 | CE2 | PHE- 1277 | 3.69 | 0 | Hydrophobic |
| O1 | ND2 | ASN- 1278 | 3.07 | 175.9 | H-Bond (Protein Donor) |
| C5 | CD1 | ILE- 1287 | 3.88 | 0 | Hydrophobic |
| C12 | CD1 | ILE- 1287 | 4.01 | 0 | Hydrophobic |