3.000 Å
X-ray
2014-01-16
Name: | Cyclin-dependent kinase 9 |
---|---|
ID: | CDK9_HUMAN |
AC: | P50750 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 100 % |
B-Factor: | 81.840 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.942 | 465.750 |
% Hydrophobic | % Polar |
---|---|
57.97 | 42.03 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 48.26 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
105.304 | -32.8557 | -18.5327 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CG2 | ILE- 25 | 4.48 | 0 | Hydrophobic |
N6 | O | ASP- 104 | 3.39 | 121.34 | H-Bond (Ligand Donor) |
N1 | N | CYS- 106 | 3.44 | 149.6 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 156 | 3.95 | 0 | Hydrophobic |