1.660 Å
X-ray
2013-11-22
Name: | Protease |
---|---|
ID: | O38896_9HIV1 |
AC: | O38896 |
Organism: | Human immunodeficiency virus 1 |
Reign: | Viruses |
TaxID: | 11676 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.269 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.315 | 303.750 |
% Hydrophobic | % Polar |
---|---|
51.11 | 48.89 |
According to VolSite |
HET Code: | 017 |
---|---|
Formula: | C27H37N3O7S |
Molecular weight: | 547.664 g/mol |
DrugBank ID: | DB01264 |
Buried Surface Area: | 37.71 % |
Polar Surface area: | 148.79 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 12 |
X | Y | Z |
---|---|---|
11.7366 | -9.50261 | 22.8336 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C7 | CD2 | LEU- 23 | 4.26 | 0 | Hydrophobic |
C15 | CD1 | ILE- 32 | 4.38 | 0 | Hydrophobic |
C14 | CD1 | ILE- 47 | 3.77 | 0 | Hydrophobic |
O22 | N | ILE- 50 | 2.84 | 159.44 | H-Bond (Protein Donor) |
C35 | CG2 | ILE- 50 | 4.05 | 0 | Hydrophobic |
C33 | CD1 | ILE- 50 | 3.78 | 0 | Hydrophobic |
C15 | SD | MET- 54 | 3.96 | 0 | Hydrophobic |
C27 | CB | MET- 54 | 4.24 | 0 | Hydrophobic |
C29 | CB | MET- 54 | 3.82 | 0 | Hydrophobic |
C15 | CB | THR- 80 | 3.95 | 0 | Hydrophobic |
C7 | CD1 | ILE- 82 | 3.88 | 0 | Hydrophobic |
C6 | CG2 | VAL- 84 | 3.56 | 0 | Hydrophobic |