2.650 Å
X-ray
2013-11-13
Name: | Primosomal protein N' |
---|---|
ID: | A6TGC5_KLEP7 |
AC: | A6TGC5 |
Organism: | Klebsiella pneumoniae subsp. pneumoniae |
Reign: | Bacteria |
TaxID: | 272620 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
H | 100 % |
B-Factor: | 55.511 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.759 | 810.000 |
% Hydrophobic | % Polar |
---|---|
42.92 | 57.08 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 40.46 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
16.7178 | 0.430296 | -10.8045 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3A | N | GLY- 228 | 3.17 | 124.42 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 229 | 2.79 | 167.56 | H-Bond (Protein Donor) |
O2B | N | LYS- 229 | 3.25 | 160.44 | H-Bond (Protein Donor) |
O3A | N | LYS- 229 | 3.24 | 120.8 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 229 | 2.79 | 0 | Ionic (Protein Cationic) |
O1B | OG1 | THR- 230 | 2.91 | 135.97 | H-Bond (Protein Donor) |
O1B | N | THR- 230 | 3.31 | 146.05 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 230 | 2.98 | 137.49 | H-Bond (Protein Donor) |
O1A | NH2 | ARG- 263 | 3.25 | 171.27 | H-Bond (Protein Donor) |
O2A | NH1 | ARG- 263 | 3.18 | 170.84 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 543 | 3.15 | 143.43 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 543 | 3.15 | 0 | Ionic (Protein Cationic) |