2.650 Å
X-ray
2013-11-13
| Name: | Primosomal protein N' |
|---|---|
| ID: | A6TGC5_KLEP7 |
| AC: | A6TGC5 |
| Organism: | Klebsiella pneumoniae subsp. pneumoniae |
| Reign: | Bacteria |
| TaxID: | 272620 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| H | 100 % |
| B-Factor: | 55.511 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.759 | 810.000 |
| % Hydrophobic | % Polar |
|---|---|
| 42.92 | 57.08 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 40.46 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 16.7178 | 0.430296 | -10.8045 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3A | N | GLY- 228 | 3.17 | 124.42 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 229 | 2.79 | 167.56 | H-Bond (Protein Donor) |
| O2B | N | LYS- 229 | 3.25 | 160.44 | H-Bond (Protein Donor) |
| O3A | N | LYS- 229 | 3.24 | 120.8 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 229 | 2.79 | 0 | Ionic (Protein Cationic) |
| O1B | OG1 | THR- 230 | 2.91 | 135.97 | H-Bond (Protein Donor) |
| O1B | N | THR- 230 | 3.31 | 146.05 | H-Bond (Protein Donor) |
| O2A | OG1 | THR- 230 | 2.98 | 137.49 | H-Bond (Protein Donor) |
| O1A | NH2 | ARG- 263 | 3.25 | 171.27 | H-Bond (Protein Donor) |
| O2A | NH1 | ARG- 263 | 3.18 | 170.84 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 543 | 3.15 | 143.43 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 543 | 3.15 | 0 | Ionic (Protein Cationic) |