1.900 Å
X-ray
2013-06-30
Name: | DNA ligase |
---|---|
ID: | DNLJ_ENTFA |
AC: | Q837V6 |
Organism: | Enterococcus faecalis |
Reign: | Bacteria |
TaxID: | 226185 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 25.698 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.683 | 806.625 |
% Hydrophobic | % Polar |
---|---|
46.86 | 53.14 |
According to VolSite |
HET Code: | 1X8 |
---|---|
Formula: | C9H8N4O2S |
Molecular weight: | 236.250 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 70.78 % |
Polar Surface area: | 153.32 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
20.3436 | 33.5603 | 18.9327 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N16 | O | TYR- 87 | 2.99 | 143.54 | H-Bond (Ligand Donor) |
S12 | CD1 | LEU- 89 | 4 | 0 | Hydrophobic |
N11 | OE2 | GLU- 118 | 2.79 | 174.04 | H-Bond (Ligand Donor) |
C2 | CG | LYS- 120 | 3.99 | 0 | Hydrophobic |
N6 | N | ILE- 121 | 2.94 | 155.84 | H-Bond (Protein Donor) |
N8 | O | ILE- 121 | 3.09 | 166.85 | H-Bond (Ligand Donor) |
S12 | CZ | TYR- 227 | 3.44 | 0 | Hydrophobic |
S12 | CG2 | VAL- 289 | 4.16 | 0 | Hydrophobic |
C3 | CG2 | VAL- 289 | 3.9 | 0 | Hydrophobic |
O10 | NZ | LYS- 291 | 2.75 | 149.56 | H-Bond (Protein Donor) |