1.550 Å
X-ray
2013-06-24
Name: | Cytidine and deoxycytidylate deaminase zinc-binding region |
---|---|
ID: | Q82Y41_NITEU |
AC: | Q82Y41 |
Organism: | Nitrosomonas europaea |
Reign: | Bacteria |
TaxID: | 228410 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 96 % |
B | 4 % |
B-Factor: | 13.448 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.619 | 361.125 |
% Hydrophobic | % Polar |
---|---|
45.79 | 54.21 |
According to VolSite |
HET Code: | CTN |
---|---|
Formula: | C9H13N3O5 |
Molecular weight: | 243.217 g/mol |
DrugBank ID: | DB02097 |
Buried Surface Area: | 53.93 % |
Polar Surface area: | 128.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
21.5798 | 32.4656 | 46.0637 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CE2 | PHE- 48 | 3.58 | 0 | Hydrophobic |
O2 | ND2 | ASN- 66 | 2.79 | 137.12 | H-Bond (Protein Donor) |
O2' | ND2 | ASN- 66 | 3.05 | 150.42 | H-Bond (Protein Donor) |
C5' | CD1 | PHE- 141 | 3.8 | 0 | Hydrophobic |
O5' | N | ASP- 142 | 2.87 | 145.77 | H-Bond (Protein Donor) |
N4 | OE1 | GLU- 143 | 2.7 | 138.5 | H-Bond (Ligand Donor) |
N3 | O | HOH- 301 | 2.9 | 179.94 | H-Bond (Protein Donor) |