2.610 Å
X-ray
2013-05-23
| Name: | Decaprenylphosphoryl-beta-D-ribose oxidase |
|---|---|
| ID: | I6X8C4_MYCTU |
| AC: | I6X8C4 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83332 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 53.475 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | FAD |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.948 | 691.875 |
| % Hydrophobic | % Polar |
|---|---|
| 46.34 | 53.66 |
| According to VolSite | |

| HET Code: | 1W6 |
|---|---|
| Formula: | C16H12N3O4S2 |
| Molecular weight: | 374.414 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 57.37 % |
| Polar Surface area: | 155.94 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -24.5587 | -24.3824 | 5.2664 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O22 | OG | SER- 228 | 3.03 | 164.17 | H-Bond (Protein Donor) |
| C38 | CZ2 | TRP- 230 | 3.35 | 0 | Hydrophobic |
| S27 | C6 | FAD- 501 | 3.99 | 0 | Hydrophobic |
| C32 | C7M | FAD- 501 | 3.66 | 0 | Hydrophobic |