1.900 Å
X-ray
2013-05-15
Name: | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
---|---|
ID: | COBT_SALTY |
AC: | Q05603 |
Organism: | Salmonella typhimurium |
Reign: | Bacteria |
TaxID: | 99287 |
EC Number: | 2.4.2.21 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 6.662 |
---|---|
Number of residues: | 17 |
Including | |
Standard Amino Acids: | 15 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.613 | 263.250 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | DMD |
---|---|
Formula: | C9H10N2 |
Molecular weight: | 146.189 g/mol |
DrugBank ID: | DB02591 |
Buried Surface Area: | 43.27 % |
Polar Surface area: | 28.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
58.5349 | 42.3994 | 13.0689 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C8 | CB | SER- 80 | 3.87 | 0 | Hydrophobic |
C8 | CG1 | VAL- 84 | 3.88 | 0 | Hydrophobic |
C6 | CG1 | VAL- 84 | 3.68 | 0 | Hydrophobic |
C7 | CG | GLN- 88 | 3.54 | 0 | Hydrophobic |
C7A | CD1 | LEU- 175 | 4.28 | 0 | Hydrophobic |
C4 | SD | MET- 177 | 3.75 | 0 | Hydrophobic |
C7A | CD1 | LEU- 315 | 3.96 | 0 | Hydrophobic |
N1 | OE2 | GLU- 317 | 2.59 | 174.28 | H-Bond (Ligand Donor) |