1.900 Å
X-ray
2013-05-15
| Name: | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|---|
| ID: | COBT_SALTY |
| AC: | Q05603 |
| Organism: | Salmonella typhimurium |
| Reign: | Bacteria |
| TaxID: | 99287 |
| EC Number: | 2.4.2.21 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 6.662 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 15 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.613 | 263.250 |
| % Hydrophobic | % Polar |
|---|---|
| 50.00 | 50.00 |
| According to VolSite | |

| HET Code: | DMD |
|---|---|
| Formula: | C9H10N2 |
| Molecular weight: | 146.189 g/mol |
| DrugBank ID: | DB02591 |
| Buried Surface Area: | 43.27 % |
| Polar Surface area: | 28.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 0 |
| X | Y | Z |
|---|---|---|
| 58.5349 | 42.3994 | 13.0689 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C8 | CB | SER- 80 | 3.87 | 0 | Hydrophobic |
| C8 | CG1 | VAL- 84 | 3.88 | 0 | Hydrophobic |
| C6 | CG1 | VAL- 84 | 3.68 | 0 | Hydrophobic |
| C7 | CG | GLN- 88 | 3.54 | 0 | Hydrophobic |
| C7A | CD1 | LEU- 175 | 4.28 | 0 | Hydrophobic |
| C4 | SD | MET- 177 | 3.75 | 0 | Hydrophobic |
| C7A | CD1 | LEU- 315 | 3.96 | 0 | Hydrophobic |
| N1 | OE2 | GLU- 317 | 2.59 | 174.28 | H-Bond (Ligand Donor) |