2.660 Å
X-ray
2013-05-14
| Name: | Glycogen [starch] synthase |
|---|---|
| ID: | E7NKU1_YEASO |
| AC: | E7NKU1 |
| Organism: | Saccharomyces cerevisiae |
| Reign: | Eukaryota |
| TaxID: | 764101 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 71.638 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.830 | 1542.375 |
| % Hydrophobic | % Polar |
|---|---|
| 42.89 | 57.11 |
| According to VolSite | |

| HET Code: | U5P |
|---|---|
| Formula: | C9H11N2O9P |
| Molecular weight: | 322.165 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 61.76 % |
| Polar Surface area: | 181.33 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 9 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 29.1131 | 55.644 | -27.976 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2 | NH1 | ARG- 20 | 3.25 | 158.91 | H-Bond (Protein Donor) |
| O1P | N | ARG- 320 | 2.96 | 124.54 | H-Bond (Protein Donor) |
| O2P | CZ | ARG- 320 | 3.4 | 0 | Ionic (Protein Cationic) |
| C1' | CE2 | PHE- 480 | 4.36 | 0 | Hydrophobic |
| O4 | N | LEU- 481 | 2.86 | 149.02 | H-Bond (Protein Donor) |
| C2' | CE2 | TYR- 492 | 4.02 | 0 | Hydrophobic |
| C3' | CB | TYR- 513 | 4.07 | 0 | Hydrophobic |
| C5' | CB | THR- 514 | 4.48 | 0 | Hydrophobic |
| O2' | OE2 | GLU- 517 | 2.61 | 132.4 | H-Bond (Ligand Donor) |