2.660 Å
X-ray
2013-05-14
Name: | Glycogen [starch] synthase |
---|---|
ID: | E7NKU1_YEASO |
AC: | E7NKU1 |
Organism: | Saccharomyces cerevisiae |
Reign: | Eukaryota |
TaxID: | 764101 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 71.638 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.830 | 1542.375 |
% Hydrophobic | % Polar |
---|---|
42.89 | 57.11 |
According to VolSite |
HET Code: | U5P |
---|---|
Formula: | C9H11N2O9P |
Molecular weight: | 322.165 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.76 % |
Polar Surface area: | 181.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
29.1131 | 55.644 | -27.976 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2 | NH1 | ARG- 20 | 3.25 | 158.91 | H-Bond (Protein Donor) |
O1P | N | ARG- 320 | 2.96 | 124.54 | H-Bond (Protein Donor) |
O2P | CZ | ARG- 320 | 3.4 | 0 | Ionic (Protein Cationic) |
C1' | CE2 | PHE- 480 | 4.36 | 0 | Hydrophobic |
O4 | N | LEU- 481 | 2.86 | 149.02 | H-Bond (Protein Donor) |
C2' | CE2 | TYR- 492 | 4.02 | 0 | Hydrophobic |
C3' | CB | TYR- 513 | 4.07 | 0 | Hydrophobic |
C5' | CB | THR- 514 | 4.48 | 0 | Hydrophobic |
O2' | OE2 | GLU- 517 | 2.61 | 132.4 | H-Bond (Ligand Donor) |