sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
1.470 Å
X-ray
2013-03-28
| Min | Mean | Median | Standard Deviation | Max | Count | |
|---|---|---|---|---|---|---|
| pChEMBL: | 2.430 | 2.860 | 2.860 | 0.440 | 3.300 | 2 |
| Name: | Cytohesin-2 |
|---|---|
| ID: | CYH2_HUMAN |
| AC: | Q99418 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 18.764 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 17 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.031 | 307.125 |
| % Hydrophobic | % Polar |
|---|---|
| 68.13 | 31.87 |
| According to VolSite | |
| HET Code: | HRC |
|---|---|
| Formula: | C14H15NO3S |
| Molecular weight: | 277.339 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.94 % |
| Polar Surface area: | 74.78 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 28.0936 | 9.40232 | 54.5519 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C8 | CD2 | LEU- 148 | 3.71 | 0 | Hydrophobic |
| C11 | CD2 | LEU- 148 | 3.63 | 0 | Hydrophobic |
| C7 | CG | ARG- 152 | 4.24 | 0 | Hydrophobic |
| O1 | N | LEU- 153 | 2.81 | 154.74 | H-Bond (Protein Donor) |
| C7 | CB | PRO- 154 | 4.18 | 0 | Hydrophobic |
| C14 | CD1 | ILE- 160 | 4.22 | 0 | Hydrophobic |
| C12 | CG2 | ILE- 160 | 3.58 | 0 | Hydrophobic |
| C12 | CG | MET- 164 | 3.93 | 0 | Hydrophobic |
| C11 | SD | MET- 164 | 3.84 | 0 | Hydrophobic |
| C3 | CG2 | ILE- 193 | 4.28 | 0 | Hydrophobic |
| C12 | CD1 | ILE- 193 | 3.74 | 0 | Hydrophobic |
| C4 | CG1 | ILE- 245 | 4.33 | 0 | Hydrophobic |
| C6 | CG2 | ILE- 245 | 3.52 | 0 | Hydrophobic |
| C2 | CD1 | ILE- 245 | 3.61 | 0 | Hydrophobic |
| O3 | O | HOH- 552 | 3.17 | 164.64 | H-Bond (Ligand Donor) |
| N | O | HOH- 574 | 2.89 | 148.13 | H-Bond (Ligand Donor) |
