1.600 Å
X-ray
2013-01-24
| Name: | Uncharacterized protein |
|---|---|
| ID: | C1EBN1_MICCC |
| AC: | C1EBN1 |
| Organism: | Micromonas commoda |
| Reign: | Eukaryota |
| TaxID: | 296587 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 86 % |
| B | 14 % |
| B-Factor: | 17.985 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.324 | 904.500 |
| % Hydrophobic | % Polar |
|---|---|
| 47.39 | 52.61 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 48.53 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 35.4651 | 42.6899 | 16.555 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CB | LEU- 178 | 3.72 | 0 | Hydrophobic |
| C1' | CD1 | LEU- 178 | 3.95 | 0 | Hydrophobic |
| O3A | N | SER- 180 | 2.97 | 134.28 | H-Bond (Protein Donor) |
| C5' | CB | VAL- 186 | 4.25 | 0 | Hydrophobic |
| N6 | O | ALA- 262 | 2.93 | 139.45 | H-Bond (Ligand Donor) |
| N1 | N | GLU- 264 | 2.96 | 161.18 | H-Bond (Protein Donor) |
| C2' | CG2 | THR- 268 | 4.34 | 0 | Hydrophobic |
| C2' | CD1 | ILE- 337 | 3.65 | 0 | Hydrophobic |