1.350 Å
X-ray
2012-09-17
| Name: | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|---|
| ID: | ISPH_ECOLI |
| AC: | P62623 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 11.796 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.748 | 405.000 |
| % Hydrophobic | % Polar |
|---|---|
| 44.17 | 55.83 |
| According to VolSite | |

| HET Code: | 10E |
|---|---|
| Formula: | C5H11NO7P2 |
| Molecular weight: | 259.091 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 78.43 % |
| Polar Surface area: | 169.04 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 1 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 3 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -38.9845 | -0.634667 | 15.6824 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C6 | CG2 | VAL- 15 | 3.48 | 0 | Hydrophobic |
| O13 | ND1 | HIS- 41 | 2.79 | 159.32 | H-Bond (Protein Donor) |
| O9 | N | HIS- 41 | 2.82 | 168.95 | H-Bond (Protein Donor) |
| C4 | CB | ALA- 73 | 3.38 | 0 | Hydrophobic |
| O11 | NE2 | HIS- 74 | 3.3 | 127.33 | H-Bond (Protein Donor) |
| O9 | NE2 | HIS- 74 | 2.99 | 154.18 | H-Bond (Protein Donor) |
| C1 | CG2 | VAL- 99 | 4.35 | 0 | Hydrophobic |
| O13 | NE2 | HIS- 124 | 2.8 | 167.46 | H-Bond (Protein Donor) |
| N2 | OE2 | GLU- 126 | 3.46 | 125.02 | H-Bond (Ligand Donor) |
| N2 | OG1 | THR- 167 | 2.92 | 165.64 | H-Bond (Ligand Donor) |
| C1 | CG2 | THR- 168 | 4.19 | 0 | Hydrophobic |
| O10 | OG | SER- 225 | 2.63 | 159.01 | H-Bond (Protein Donor) |
| O13 | N | SER- 226 | 2.84 | 160.47 | H-Bond (Protein Donor) |
| O15 | N | ASN- 227 | 2.75 | 165.64 | H-Bond (Protein Donor) |
| O15 | ND2 | ASN- 227 | 2.82 | 160.76 | H-Bond (Protein Donor) |
| C6 | CB | ALA- 268 | 4.39 | 0 | Hydrophobic |
| O10 | OG | SER- 269 | 2.73 | 158.8 | H-Bond (Protein Donor) |
| O14 | O | HOH- 760 | 2.57 | 179.97 | H-Bond (Protein Donor) |