3.000 Å
X-ray
2012-05-10
Name: | Uncharacterized protein |
---|---|
ID: | Q8P8F1_XANCP |
AC: | Q8P8F1 |
Organism: | Xanthomonas campestris pv. campestris |
Reign: | Bacteria |
TaxID: | 190485 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 76 % |
B | 24 % |
B-Factor: | 23.101 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 41 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.950 | 1410.750 |
% Hydrophobic | % Polar |
---|---|
42.34 | 57.66 |
According to VolSite |
HET Code: | C2E |
---|---|
Formula: | C20H22N10O14P2 |
Molecular weight: | 688.395 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.09 % |
Polar Surface area: | 366.32 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 20 |
H-Bond Donors: | 6 |
Rings: | 7 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
16.5561 | 63.8086 | 23.7237 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2P | NH2 | ARG- 44 | 3.25 | 133.25 | H-Bond (Protein Donor) |
O1P | NH1 | ARG- 44 | 2.62 | 149.47 | H-Bond (Protein Donor) |
O1P | NH2 | ARG- 44 | 2.94 | 133.06 | H-Bond (Protein Donor) |
O1P | OG | SER- 53 | 3.46 | 159.37 | H-Bond (Protein Donor) |
C5' | CG | PRO- 54 | 4.33 | 0 | Hydrophobic |
C4' | CB | PRO- 54 | 4.4 | 0 | Hydrophobic |
C1' | CB | PRO- 54 | 3.94 | 0 | Hydrophobic |
C1A | CD | LYS- 66 | 4.15 | 0 | Hydrophobic |
C4A | CD | LYS- 66 | 3.95 | 0 | Hydrophobic |