3.000 Å
X-ray
2012-05-10
| Name: | Uncharacterized protein |
|---|---|
| ID: | Q8P8F1_XANCP |
| AC: | Q8P8F1 |
| Organism: | Xanthomonas campestris pv. campestris |
| Reign: | Bacteria |
| TaxID: | 190485 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 76 % |
| B | 24 % |
| B-Factor: | 23.101 |
|---|---|
| Number of residues: | 41 |
| Including | |
| Standard Amino Acids: | 41 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.950 | 1410.750 |
| % Hydrophobic | % Polar |
|---|---|
| 42.34 | 57.66 |
| According to VolSite | |

| HET Code: | C2E |
|---|---|
| Formula: | C20H22N10O14P2 |
| Molecular weight: | 688.395 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 50.09 % |
| Polar Surface area: | 366.32 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 20 |
| H-Bond Donors: | 6 |
| Rings: | 7 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 16.5561 | 63.8086 | 23.7237 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2P | NH2 | ARG- 44 | 3.25 | 133.25 | H-Bond (Protein Donor) |
| O1P | NH1 | ARG- 44 | 2.62 | 149.47 | H-Bond (Protein Donor) |
| O1P | NH2 | ARG- 44 | 2.94 | 133.06 | H-Bond (Protein Donor) |
| O1P | OG | SER- 53 | 3.46 | 159.37 | H-Bond (Protein Donor) |
| C5' | CG | PRO- 54 | 4.33 | 0 | Hydrophobic |
| C4' | CB | PRO- 54 | 4.4 | 0 | Hydrophobic |
| C1' | CB | PRO- 54 | 3.94 | 0 | Hydrophobic |
| C1A | CD | LYS- 66 | 4.15 | 0 | Hydrophobic |
| C4A | CD | LYS- 66 | 3.95 | 0 | Hydrophobic |