2.900 Å
X-ray
2012-04-28
Name: | 4-substituted benzoates-glutamate ligase GH3.12 |
---|---|
ID: | GH312_ARATH |
AC: | Q9LYU4 |
Organism: | Arabidopsis thaliana |
Reign: | Eukaryota |
TaxID: | 3702 |
EC Number: | 6.3.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 4 % |
B | 96 % |
B-Factor: | 99.999 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.611 | 867.375 |
% Hydrophobic | % Polar |
---|---|
47.86 | 52.14 |
According to VolSite |
HET Code: | APC |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB02596 |
Buried Surface Area: | 32.14 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
15.939 | -31.4117 | -43.5781 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CZ | PHE- 218 | 4.34 | 0 | Hydrophobic |
C5' | CB | SER- 327 | 4.31 | 0 | Hydrophobic |
O2B | NZ | LYS- 550 | 3.46 | 0 | Ionic (Protein Cationic) |
O3' | NZ | LYS- 550 | 3.19 | 132.07 | H-Bond (Protein Donor) |