2.900 Å
X-ray
2012-04-28
| Name: | 4-substituted benzoates-glutamate ligase GH3.12 |
|---|---|
| ID: | GH312_ARATH |
| AC: | Q9LYU4 |
| Organism: | Arabidopsis thaliana |
| Reign: | Eukaryota |
| TaxID: | 3702 |
| EC Number: | 6.3.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 4 % |
| B | 96 % |
| B-Factor: | 99.999 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.611 | 867.375 |
| % Hydrophobic | % Polar |
|---|---|
| 47.86 | 52.14 |
| According to VolSite | |

| HET Code: | APC |
|---|---|
| Formula: | C11H14N5O12P3 |
| Molecular weight: | 501.176 g/mol |
| DrugBank ID: | DB02596 |
| Buried Surface Area: | 32.14 % |
| Polar Surface area: | 310.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 15.939 | -31.4117 | -43.5781 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CZ | PHE- 218 | 4.34 | 0 | Hydrophobic |
| C5' | CB | SER- 327 | 4.31 | 0 | Hydrophobic |
| O2B | NZ | LYS- 550 | 3.46 | 0 | Ionic (Protein Cationic) |
| O3' | NZ | LYS- 550 | 3.19 | 132.07 | H-Bond (Protein Donor) |