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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4eiq

2.760 Å

X-ray

2012-04-05

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Putative FAD-monooxygenase
ID:Q8KI25_NOCAE
AC:Q8KI25
Organism:Lechevalieria aerocolonigenes
Reign:Bacteria
TaxID:68170
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:56.465
Number of residues:33
Including
Standard Amino Acids: 32
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.3872133.000

% Hydrophobic% Polar
49.2150.79
According to VolSite

Ligand :
4eiq_2 Structure
HET Code: KCT
Formula: C21H12N3O3
Molecular weight: 354.338 g/mol
DrugBank ID: -
Buried Surface Area:66.78 %
Polar Surface area: 100.81 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 3
Rings: 6
Aromatic rings: 5
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
20.6843-26.182315.0759


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
N6OLYS- 463.08138.89H-Bond
(Ligand Donor)
C3CBTHR- 493.940Hydrophobic
C10CBPHE- 2274.370Hydrophobic
C21CGPRO- 2283.950Hydrophobic
C20CGPRO- 2283.710Hydrophobic
C19CGPRO- 2283.910Hydrophobic
C9CG1VAL- 2414.090Hydrophobic
C22CBPRO- 3033.80Hydrophobic
C8CGPRO- 3034.230Hydrophobic
C10CD1LEU- 3584.050Hydrophobic
N12OE2GLU- 3962.86150.49H-Bond
(Ligand Donor)
N13OE2GLU- 3962.61159.99H-Bond
(Ligand Donor)
C1CGGLU- 3964.020Hydrophobic
C1CE1PHE- 3973.430Hydrophobic