scPDB - 4e73 entry

Protein Data Bank Entry:

PDB ID : 4e73

Resolution :2.270 Å

Experimental Method : X-ray

Deposition Date : 2012-03-16

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Mitogen-activated protein kinase 8
ID:	MK08_HUMAN
AC:	P45983
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.24

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	40.700
Number of residues:	30
Including
Standard Amino Acids:	30
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.150	894.375

% Hydrophobic	% Polar
47.92	52.08
According to VolSite

Ligand :

HET Code:	0NR
Formula:	C34H35N4O4
Molecular weight:	563.666 g/mol
DrugBank ID:	-
Buried Surface Area:	47.25 %
Polar Surface area:	116.24 Å2

Number of
H-Bond Acceptors:	6
H-Bond Donors:	2
Rings:	8
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	1
Rotatable Bonds:	7

Mass center Coordinates

X	Y	Z
0.0399524	0.450357	9.63407

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C40	CB	LYS- 30	4.47	0	Hydrophobic	false
C1	CD1	ILE- 32	4.25	0	Hydrophobic	false
C15	CD1	ILE- 32	3.97	0	Hydrophobic	false
C24	CD1	ILE- 32	4.04	0	Hydrophobic	false
C26	CG2	ILE- 32	3.91	0	Hydrophobic	false
C37	CG2	ILE- 32	4.18	0	Hydrophobic	false
C15	CB	VAL- 40	3.72	0	Hydrophobic	false
C16	CG2	VAL- 40	3.65	0	Hydrophobic	false
C36	CB	ALA- 42	3.35	0	Hydrophobic	false
C3	CB	ALA- 53	3.4	0	Hydrophobic	false
C2	CD1	ILE- 86	4.31	0	Hydrophobic	false
C3	CG2	ILE- 86	4.34	0	Hydrophobic	false
C3	SD	MET- 108	3.96	0	Hydrophobic	false
C24	CD1	LEU- 110	3.95	0	Hydrophobic	false
O14	N	MET- 111	2.76	153.62	H-Bond (Protein Donor)	false
C11	CG1	VAL- 158	3.77	0	Hydrophobic	false
C3	CD1	LEU- 168	3.79	0	Hydrophobic	false
C19	CD2	LEU- 168	3.42	0	Hydrophobic	false