2.990 Å
X-ray
2012-02-27
| Name: | Integrin beta-1 | Integrin beta-1-binding protein 1 |
|---|---|---|
| ID: | ITB1_HUMAN | ITBP1_HUMAN |
| AC: | P05556 | O14713 |
| Organism: | Homo sapiens | |
| Reign: | Eukaryota | |
| TaxID: | 9606 | |
| EC Number: | / | |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| 1 | 52 % |
| 4 | 13 % |
| 7 | 35 % |
| B-Factor: | 72.057 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.130 | 826.875 |
| % Hydrophobic | % Polar |
|---|---|
| 45.71 | 54.29 |
| According to VolSite | |

| HET Code: | SER_ALA_VAL_THR |
|---|---|
| Formula: | C15H29N4O6 |
| Molecular weight: | 361.414 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 41.16 % |
| Polar Surface area: | 172.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 6 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 10 |
| X | Y | Z |
|---|---|---|
| -32.6238 | 96.87 | -41.3118 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O | N | CYS- 143 | 3.06 | 133.74 | H-Bond (Protein Donor) |
| CG2 | SG | CYS- 143 | 4.11 | 0 | Hydrophobic |
| CG1 | CD2 | LEU- 177 | 3.88 | 0 | Hydrophobic |
| N | OE1 | GLN- 181 | 3.27 | 140.48 | H-Bond (Ligand Donor) |
| CG2 | SG | CYS- 184 | 4.21 | 0 | Hydrophobic |
| OG1 | O | LYS- 784 | 3.32 | 173.85 | H-Bond (Ligand Donor) |
| CB | CB | ALA- 786 | 3.99 | 0 | Hydrophobic |
| N | O | VAL- 787 | 2.66 | 130.08 | H-Bond (Ligand Donor) |
| CB | CG1 | VAL- 787 | 3.96 | 0 | Hydrophobic |
| N | O | THR- 789 | 2.73 | 164.82 | H-Bond (Ligand Donor) |