2.990 Å
X-ray
2012-02-27
Name: | Integrin beta-1 | Integrin beta-1-binding protein 1 |
---|---|---|
ID: | ITB1_HUMAN | ITBP1_HUMAN |
AC: | P05556 | O14713 |
Organism: | Homo sapiens | |
Reign: | Eukaryota | |
TaxID: | 9606 | |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
1 | 52 % |
4 | 13 % |
7 | 35 % |
B-Factor: | 72.057 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.130 | 826.875 |
% Hydrophobic | % Polar |
---|---|
45.71 | 54.29 |
According to VolSite |
HET Code: | SER_ALA_VAL_THR |
---|---|
Formula: | C15H29N4O6 |
Molecular weight: | 361.414 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 41.16 % |
Polar Surface area: | 172.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 6 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
-32.6238 | 96.87 | -41.3118 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O | N | CYS- 143 | 3.06 | 133.74 | H-Bond (Protein Donor) |
CG2 | SG | CYS- 143 | 4.11 | 0 | Hydrophobic |
CG1 | CD2 | LEU- 177 | 3.88 | 0 | Hydrophobic |
N | OE1 | GLN- 181 | 3.27 | 140.48 | H-Bond (Ligand Donor) |
CG2 | SG | CYS- 184 | 4.21 | 0 | Hydrophobic |
OG1 | O | LYS- 784 | 3.32 | 173.85 | H-Bond (Ligand Donor) |
CB | CB | ALA- 786 | 3.99 | 0 | Hydrophobic |
N | O | VAL- 787 | 2.66 | 130.08 | H-Bond (Ligand Donor) |
CB | CG1 | VAL- 787 | 3.96 | 0 | Hydrophobic |
N | O | THR- 789 | 2.73 | 164.82 | H-Bond (Ligand Donor) |