2.550 Å
X-ray
2014-11-27
| Name: | Uncharacterized protein |
|---|---|
| ID: | E0RR11_SPITD |
| AC: | E0RR11 |
| Organism: | Spirochaeta thermophila |
| Reign: | Bacteria |
| TaxID: | 665571 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 51.986 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.298 | 253.125 |
| % Hydrophobic | % Polar |
|---|---|
| 62.67 | 37.33 |
| According to VolSite | |

| HET Code: | PCG |
|---|---|
| Formula: | C10H11N5O7P |
| Molecular weight: | 344.197 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 85.57 % |
| Polar Surface area: | 183.16 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -12.917 | -37.0519 | -11.4477 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CG2 | ILE- 329 | 4.1 | 0 | Hydrophobic |
| C1' | CG2 | VAL- 348 | 4.24 | 0 | Hydrophobic |
| C1' | CB | PHE- 366 | 4.17 | 0 | Hydrophobic |
| O2' | N | GLY- 367 | 2.9 | 148.41 | H-Bond (Protein Donor) |
| O2' | OE2 | GLU- 368 | 3.04 | 169.62 | H-Bond (Ligand Donor) |
| O3' | N | MET- 369 | 3.29 | 145.05 | H-Bond (Protein Donor) |
| C2' | SD | MET- 369 | 3.5 | 0 | Hydrophobic |
| O1A | N | THR- 378 | 2.81 | 174.65 | H-Bond (Protein Donor) |
| O1A | OG1 | THR- 378 | 2.87 | 174.14 | H-Bond (Protein Donor) |
| C4' | CB | ALA- 379 | 4.2 | 0 | Hydrophobic |
| C5' | CG2 | VAL- 381 | 3.66 | 0 | Hydrophobic |