2.500 Å
X-ray
2014-02-20
Name: | Leucine--tRNA ligase |
---|---|
ID: | SYL_ECOLI |
AC: | P07813 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 88.871 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.487 | 1981.125 |
% Hydrophobic | % Polar |
---|---|
35.60 | 64.40 |
According to VolSite |
HET Code: | ILA |
---|---|
Formula: | C16H27N8O6S |
Molecular weight: | 459.501 g/mol |
DrugBank ID: | DB01755 |
Buried Surface Area: | 52.5 % |
Polar Surface area: | 230.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-15.1683 | 24.9748 | -99.1413 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CE2 | TYR- 246 | 4.05 | 0 | Hydrophobic |
N | OG1 | THR- 247 | 2.68 | 137.54 | H-Bond (Ligand Donor) |
O1A | OG1 | THR- 248 | 3.19 | 158.48 | H-Bond (Protein Donor) |
C1' | CB | TYR- 330 | 4.39 | 0 | Hydrophobic |
CB | SD | MET- 336 | 3.91 | 0 | Hydrophobic |
CD | CE | MET- 336 | 3.75 | 0 | Hydrophobic |
CD | CB | VAL- 338 | 3.75 | 0 | Hydrophobic |
CG2 | CB | ASP- 342 | 4.27 | 0 | Hydrophobic |
CG1 | CB | ASP- 342 | 3.54 | 0 | Hydrophobic |
O2A | NH2 | ARG- 344 | 2.78 | 133.3 | H-Bond (Protein Donor) |