1.400 Å
X-ray
2014-01-25
| Name: | Nitrogen regulatory protein P-II 1 |
|---|---|
| ID: | P70731_AZOBR |
| AC: | P70731 |
| Organism: | Azospirillum brasilense |
| Reign: | Bacteria |
| TaxID: | 192 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 23.399 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 17 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.498 | 300.375 |
| % Hydrophobic | % Polar |
|---|---|
| 58.43 | 41.57 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 43.95 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 11.6393 | -9.54619 | 25.4724 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CG2 | ILE- 7 | 4.06 | 0 | Hydrophobic |
| O2A | N | ARG- 38 | 3.3 | 134.15 | H-Bond (Protein Donor) |
| O2B | N | GLY- 87 | 3.14 | 145.54 | H-Bond (Protein Donor) |
| O2B | N | ASP- 88 | 3.37 | 124.57 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 90 | 3.77 | 0 | Ionic (Protein Cationic) |
| C1' | CG | LYS- 90 | 4.46 | 0 | Hydrophobic |
| N7 | NZ | LYS- 90 | 2.75 | 150.39 | H-Bond (Protein Donor) |