1.850 Å
X-ray
2013-12-24
Name: | Integrase |
---|---|
ID: | Q76353_9HIV1 |
AC: | Q76353 |
Organism: | Human immunodeficiency virus 1 |
Reign: | Viruses |
TaxID: | 11676 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 42 % |
B | 58 % |
B-Factor: | 24.478 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.692 | 398.250 |
% Hydrophobic | % Polar |
---|---|
46.61 | 53.39 |
According to VolSite |
HET Code: | NVU |
---|---|
Formula: | C9H6NO3 |
Molecular weight: | 176.149 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 54.89 % |
Polar Surface area: | 66.16 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
46.7503 | 64.5038 | 0.911385 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CE2 | CD2 | LEU- 102 | 3.72 | 0 | Hydrophobic |
CE2 | CB | ALA- 129 | 3.74 | 0 | Hydrophobic |
O | N | GLU- 170 | 3.48 | 128.99 | H-Bond (Protein Donor) |
OXT | N | GLU- 170 | 3.47 | 166.76 | H-Bond (Protein Donor) |
O | OG1 | THR- 174 | 3.01 | 158.89 | H-Bond (Protein Donor) |
CE2 | CG2 | THR- 174 | 4.23 | 0 | Hydrophobic |
CG | CG2 | THR- 174 | 3.72 | 0 | Hydrophobic |
CE1 | CE | MET- 178 | 3.87 | 0 | Hydrophobic |