2.160 Å
X-ray
2013-06-18
Name: | Tau-tubulin kinase 1 |
---|---|
ID: | TTBK1_HUMAN |
AC: | Q5TCY1 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 30.692 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.008 | 634.500 |
% Hydrophobic | % Polar |
---|---|
50.53 | 49.47 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 65.3 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-2.96985 | 5.6817 | -32.4953 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CG2 | ILE- 72 | 3.49 | 0 | Hydrophobic |
C1' | CG1 | ILE- 72 | 4.15 | 0 | Hydrophobic |
O3B | NZ | LYS- 87 | 3.08 | 134.24 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 87 | 2.71 | 156.99 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 87 | 3.08 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 87 | 2.71 | 0 | Ionic (Protein Cationic) |
N6 | O | GLN- 132 | 2.94 | 151.94 | H-Bond (Ligand Donor) |
N1 | N | GLN- 134 | 2.76 | 163.96 | H-Bond (Protein Donor) |
O3' | ND2 | ASN- 137 | 2.99 | 121.01 | H-Bond (Protein Donor) |
O2' | ND2 | ASN- 137 | 2.94 | 155.18 | H-Bond (Protein Donor) |
C2' | CB | ASN- 137 | 4.19 | 0 | Hydrophobic |
C2' | CD1 | LEU- 199 | 4.17 | 0 | Hydrophobic |