scPDB - 4bdi entry

Protein Data Bank Entry:

PDB ID : 4bdi

Resolution :2.320 Å

Experimental Method : X-ray

Deposition Date : 2012-10-05

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Serine/threonine-protein kinase Chk2
ID:	CHK2_HUMAN
AC:	O96017
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	75.421
Number of residues:	20
Including
Standard Amino Acids:	20
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.113	523.125

% Hydrophobic	% Polar
60.00	40.00
According to VolSite

Ligand :

HET Code:	HAU
Formula:	C14H19N3O2
Molecular weight:	261.320 g/mol
DrugBank ID:	-
Buried Surface Area:	44.47 %
Polar Surface area:	62.3 Å2

Number of
H-Bond Acceptors:	3
H-Bond Donors:	1
Rings:	2
Aromatic rings:	1
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	2

Mass center Coordinates

X	Y	Z
-7.96611	50.3253	11.0921

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C10	CD1	LEU- 226	4.44	0	Hydrophobic	false
C6	CD2	LEU- 226	3.77	0	Hydrophobic	false
C11	CG1	VAL- 234	3.64	0	Hydrophobic	false
C12	CB	ALA- 247	3.7	0	Hydrophobic	false
C14	CD1	LEU- 301	3.61	0	Hydrophobic	false
C6	CD1	LEU- 303	4.33	0	Hydrophobic	false
N2	N	MET- 304	2.99	155.3	H-Bond (Protein Donor)	false
N3	O	MET- 304	2.74	170.29	H-Bond (Ligand Donor)	false
C10	CD2	LEU- 354	4.5	0	Hydrophobic	false
C12	CD1	LEU- 354	3.57	0	Hydrophobic	false