2.300 Å
X-ray
2012-02-16
Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
---|---|
ID: | PDE10_HUMAN |
AC: | Q9Y233 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.1.4.17 |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 36.703 |
---|---|
Number of residues: | 18 |
Including | |
Standard Amino Acids: | 17 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.081 | 904.500 |
% Hydrophobic | % Polar |
---|---|
57.46 | 42.54 |
According to VolSite |
HET Code: | F07 |
---|---|
Formula: | C10H6N2S |
Molecular weight: | 186.233 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.45 % |
Polar Surface area: | 54.02 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 0 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
42.3575 | -2.71954 | 18.6375 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1 | CG1 | VAL- 678 | 4.11 | 0 | Hydrophobic |
C1 | CD1 | ILE- 692 | 3.54 | 0 | Hydrophobic |
C5 | CD1 | ILE- 692 | 4.38 | 0 | Hydrophobic |
S11 | CZ | PHE- 696 | 4.18 | 0 | Hydrophobic |
N7 | NE2 | GLN- 726 | 2.77 | 167.43 | H-Bond (Protein Donor) |
S11 | CZ | PHE- 729 | 3.72 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 729 | 3.64 | 0 | Aromatic Face/Face |
DuAr | DuAr | PHE- 729 | 3.64 | 0 | Aromatic Face/Face |