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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4acd

2.600 Å

X-ray

2011-12-15

Activity from ChEMBL: What is pChEMBL ?
MinMeanMedianStandard DeviationMaxCount
pChEMBL:8.3108.3108.3100.0008.3101

List of CHEMBLId :

CHEMBL2177161


Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Glycogen synthase kinase-3 beta
ID:GSK3B_HUMAN
AC:P49841
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:2.7.11.26


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:58.030
Number of residues:29
Including
Standard Amino Acids: 28
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.748671.625

% Hydrophobic% Polar
46.2353.77
According to VolSite

Ligand :
4acd_2 Structure
HET Code: GR9
Formula: C21H24N7O3S
Molecular weight: 454.525 g/mol
DrugBank ID: -
Buried Surface Area:60.44 %
Polar Surface area: 143.98 Å2
Number of
H-Bond Acceptors: 7
H-Bond Donors: 3
Rings: 4
Aromatic rings: 3
Anionic atoms: 0
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 5

Mass center Coordinates

XYZ
40.24424.981534.3612


Binding mode :
What is Poseview ?
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C13CD1ILE- 624.170Hydrophobic
C26CG2VAL- 703.970Hydrophobic
N29NZLYS- 852.93163.23H-Bond
(Protein Donor)
N31OASP- 1332.67176.03H-Bond
(Ligand Donor)
N18NVAL- 1353.4163.39H-Bond
(Protein Donor)
C10CG2THR- 1383.640Hydrophobic
C13CD2LEU- 1883.920Hydrophobic
C27CBASP- 2003.990Hydrophobic