2.400 Å
X-ray
2011-07-23
Name: | Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase |
---|---|
ID: | BPHB_COMTE |
AC: | Q46381 |
Organism: | Comamonas testosteroni |
Reign: | Bacteria |
TaxID: | 285 |
EC Number: | 1.3.1.56 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 39.328 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | NAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.783 | 411.750 |
% Hydrophobic | % Polar |
---|---|
59.02 | 40.98 |
According to VolSite |
HET Code: | BPY |
---|---|
Formula: | C12H10O2 |
Molecular weight: | 186.207 g/mol |
DrugBank ID: | DB02923 |
Buried Surface Area: | 68.51 % |
Polar Surface area: | 40.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-2.19321 | -20.988 | -3.96557 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CK1 | CZ2 | TRP- 90 | 3.17 | 0 | Hydrophobic |
CK4 | CB | SER- 142 | 4.43 | 0 | Hydrophobic |
OK2 | ND2 | ASN- 143 | 2.71 | 124.93 | H-Bond (Protein Donor) |
OK1 | OH | TYR- 155 | 3.07 | 134.96 | H-Bond (Ligand Donor) |
CK6 | CD2 | LEU- 191 | 3.91 | 0 | Hydrophobic |
CK6 | CD1 | ILE- 204 | 3.52 | 0 | Hydrophobic |
CK9 | CD1 | LEU- 209 | 3.85 | 0 | Hydrophobic |
CKA | CE | MET- 212 | 3.86 | 0 | Hydrophobic |
CKB | CE | MET- 255 | 3.97 | 0 | Hydrophobic |