2.680 Å
X-ray
2014-04-11
Name: | Acetylcholine-binding protein |
---|---|
ID: | ACHP_LYMST |
AC: | P58154 |
Organism: | Lymnaea stagnalis |
Reign: | Eukaryota |
TaxID: | 6523 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 50 % |
E | 50 % |
B-Factor: | 37.744 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.042 | 617.625 |
% Hydrophobic | % Polar |
---|---|
58.47 | 41.53 |
According to VolSite |
HET Code: | CT4 |
---|---|
Formula: | C6H8ClN5O2S |
Molecular weight: | 249.678 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 73.76 % |
Polar Surface area: | 123.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
53.5942 | 16.4796 | -30.0782 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3 | CZ3 | TRP- 53 | 3.26 | 0 | Hydrophobic |
O1 | CZ | ARG- 55 | 3.46 | 0 | Ionic (Protein Cationic) |
CL | CB | ARG- 104 | 3.61 | 0 | Hydrophobic |
S | CD2 | LEU- 112 | 3.7 | 0 | Hydrophobic |
CL | CG | LEU- 112 | 3.7 | 0 | Hydrophobic |
C3 | SD | MET- 114 | 4.47 | 0 | Hydrophobic |
C3 | CH2 | TRP- 143 | 3.99 | 0 | Hydrophobic |
CL | CG2 | THR- 144 | 4.42 | 0 | Hydrophobic |
C3 | CE2 | TYR- 185 | 3.57 | 0 | Hydrophobic |
N4 | O | HOH- 402 | 3 | 142.24 | H-Bond (Protein Donor) |