2.100 Å
X-ray
2014-02-21
| Name: | Gallate dioxygenase |
|---|---|
| ID: | G2IKE5_9SPHN |
| AC: | G2IKE5 |
| Organism: | Sphingobium sp. SYK-6 |
| Reign: | Bacteria |
| TaxID: | 627192 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 29 % |
| B | 71 % |
| B-Factor: | 15.454 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 20 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | FE2 |
| Ligandability | Volume (Å3) |
|---|---|
| 0.663 | 273.375 |
| % Hydrophobic | % Polar |
|---|---|
| 58.02 | 41.98 |
| According to VolSite | |

| HET Code: | GDE |
|---|---|
| Formula: | C7H5O5 |
| Molecular weight: | 169.112 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 71.55 % |
| Polar Surface area: | 100.82 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 3 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 23.0058 | 3.22642 | 9.17433 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAJ | CB | THR- 13 | 3.97 | 0 | Hydrophobic |
| CAF | CG | PRO- 14 | 3.6 | 0 | Hydrophobic |
| CAG | CG1 | VAL- 194 | 3.92 | 0 | Hydrophobic |
| OAD | OG1 | THR- 267 | 2.77 | 173.62 | H-Bond (Ligand Donor) |
| OAC | OE1 | GLU- 377 | 3.12 | 136.37 | H-Bond (Ligand Donor) |
| OAA | ND2 | ASN- 387 | 2.77 | 156.5 | H-Bond (Protein Donor) |
| OAA | OH | TYR- 391 | 2.64 | 170.65 | H-Bond (Protein Donor) |
| OAB | O | HOH- 818 | 2.68 | 179.99 | H-Bond (Protein Donor) |