2.100 Å
X-ray
2014-02-21
Name: | Gallate dioxygenase |
---|---|
ID: | G2IKE5_9SPHN |
AC: | G2IKE5 |
Organism: | Sphingobium sp. SYK-6 |
Reign: | Bacteria |
TaxID: | 627192 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 29 % |
B | 71 % |
B-Factor: | 15.454 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | FE2 |
Ligandability | Volume (Å3) |
---|---|
0.663 | 273.375 |
% Hydrophobic | % Polar |
---|---|
58.02 | 41.98 |
According to VolSite |
HET Code: | GDE |
---|---|
Formula: | C7H5O5 |
Molecular weight: | 169.112 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 71.55 % |
Polar Surface area: | 100.82 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
23.0058 | 3.22642 | 9.17433 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAJ | CB | THR- 13 | 3.97 | 0 | Hydrophobic |
CAF | CG | PRO- 14 | 3.6 | 0 | Hydrophobic |
CAG | CG1 | VAL- 194 | 3.92 | 0 | Hydrophobic |
OAD | OG1 | THR- 267 | 2.77 | 173.62 | H-Bond (Ligand Donor) |
OAC | OE1 | GLU- 377 | 3.12 | 136.37 | H-Bond (Ligand Donor) |
OAA | ND2 | ASN- 387 | 2.77 | 156.5 | H-Bond (Protein Donor) |
OAA | OH | TYR- 391 | 2.64 | 170.65 | H-Bond (Protein Donor) |
OAB | O | HOH- 818 | 2.68 | 179.99 | H-Bond (Protein Donor) |