2.000 Å
X-ray
2013-06-19
Name: | 4-phosphopantoate--beta-alanine ligase |
---|---|
ID: | PPS_THEKO |
AC: | Q5JIZ8 |
Organism: | Thermococcus kodakarensis ) |
Reign: | Archaea |
TaxID: | 69014 |
EC Number: | 6.3.2.36 |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 25.210 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.588 | 793.125 |
% Hydrophobic | % Polar |
---|---|
47.66 | 52.34 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 70.96 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
22.6763 | -2.68916 | -10.0018 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CB | ALA- 36 | 3.85 | 0 | Hydrophobic |
C3' | CB | ARG- 39 | 4.5 | 0 | Hydrophobic |
C1' | CG | LEU- 161 | 4.3 | 0 | Hydrophobic |
O2' | OD1 | ASP- 181 | 2.83 | 172.67 | H-Bond (Ligand Donor) |
N3 | N | LEU- 182 | 3.15 | 149.49 | H-Bond (Protein Donor) |
N6 | OD1 | ASN- 199 | 3.05 | 149.1 | H-Bond (Ligand Donor) |
N1 | N | ILE- 200 | 2.95 | 159.58 | H-Bond (Protein Donor) |
N7 | O | HOH- 411 | 3.08 | 179.98 | H-Bond (Protein Donor) |