2.000 Å
X-ray
2013-06-19
| Name: | 4-phosphopantoate--beta-alanine ligase |
|---|---|
| ID: | PPS_THEKO |
| AC: | Q5JIZ8 |
| Organism: | Thermococcus kodakarensis ) |
| Reign: | Archaea |
| TaxID: | 69014 |
| EC Number: | 6.3.2.36 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 25.210 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.588 | 793.125 |
| % Hydrophobic | % Polar |
|---|---|
| 47.66 | 52.34 |
| According to VolSite | |

| HET Code: | ADN |
|---|---|
| Formula: | C10H13N5O4 |
| Molecular weight: | 267.241 g/mol |
| DrugBank ID: | DB00640 |
| Buried Surface Area: | 70.96 % |
| Polar Surface area: | 139.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 22.6763 | -2.68916 | -10.0018 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CB | ALA- 36 | 3.85 | 0 | Hydrophobic |
| C3' | CB | ARG- 39 | 4.5 | 0 | Hydrophobic |
| C1' | CG | LEU- 161 | 4.3 | 0 | Hydrophobic |
| O2' | OD1 | ASP- 181 | 2.83 | 172.67 | H-Bond (Ligand Donor) |
| N3 | N | LEU- 182 | 3.15 | 149.49 | H-Bond (Protein Donor) |
| N6 | OD1 | ASN- 199 | 3.05 | 149.1 | H-Bond (Ligand Donor) |
| N1 | N | ILE- 200 | 2.95 | 159.58 | H-Bond (Protein Donor) |
| N7 | O | HOH- 411 | 3.08 | 179.98 | H-Bond (Protein Donor) |