2.860 Å
X-ray
2013-01-09
| Name: | D-amino-acid oxidase |
|---|---|
| ID: | OXDA_HUMAN |
| AC: | P14920 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 1.4.3.3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 44.013 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | FAD |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.401 | 546.750 |
| % Hydrophobic | % Polar |
|---|---|
| 63.58 | 36.42 |
| According to VolSite | |

| HET Code: | 3LD |
|---|---|
| Formula: | C12H11N2O2 |
| Molecular weight: | 215.228 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 72.43 % |
| Polar Surface area: | 64.52 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 67.9266 | 67.9125 | 8.45219 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C12 | CB | LEU- 51 | 4.05 | 0 | Hydrophobic |
| C11 | CD2 | LEU- 51 | 3.63 | 0 | Hydrophobic |
| C4 | CG | GLN- 53 | 4.42 | 0 | Hydrophobic |
| C11 | CD1 | LEU- 215 | 4.49 | 0 | Hydrophobic |
| C6 | CD1 | LEU- 215 | 3.92 | 0 | Hydrophobic |
| C11 | CD1 | ILE- 230 | 4.15 | 0 | Hydrophobic |
| O15 | NH1 | ARG- 283 | 3.39 | 170.34 | H-Bond (Protein Donor) |
| N13 | O | GLY- 313 | 2.97 | 121.97 | H-Bond (Ligand Donor) |