2.100 Å
X-ray
2012-08-31
| Name: | Genome polyprotein |
|---|---|
| ID: | Q6DLV0_9FLAV |
| AC: | Q6DLV0 |
| Organism: | Dengue virus 3 |
| Reign: | Viruses |
| TaxID: | 11069 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 58.988 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.942 | 968.625 |
| % Hydrophobic | % Polar |
|---|---|
| 39.72 | 60.28 |
| According to VolSite | |

| HET Code: | VWS |
|---|---|
| Formula: | C16H10ClNO5S |
| Molecular weight: | 363.772 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 46.63 % |
| Polar Surface area: | 109.89 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 0 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 32.0089 | 64.7408 | 15.2442 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL1 | CE1 | PHE- 398 | 4.21 | 0 | Hydrophobic |
| O1 | ND2 | ASN- 405 | 2.66 | 138.3 | H-Bond (Protein Donor) |
| C3 | CG1 | VAL- 411 | 3.97 | 0 | Hydrophobic |
| C4 | CZ | PHE- 412 | 3.35 | 0 | Hydrophobic |
| O4 | N | THR- 413 | 2.88 | 156.75 | H-Bond (Protein Donor) |
| O5 | OG1 | THR- 413 | 2.85 | 166.01 | H-Bond (Protein Donor) |
| CL1 | CD1 | PHE- 485 | 3.35 | 0 | Hydrophobic |
| CL1 | CG2 | VAL- 603 | 4.27 | 0 | Hydrophobic |