3.000 Å
X-ray
2012-06-28
Name: | Granule-bound starch synthase 1, chloroplastic/amyloplastic |
---|---|
ID: | SSG1_ORYSJ |
AC: | Q0DEV5 |
Organism: | Oryza sativa subsp. japonica |
Reign: | Eukaryota |
TaxID: | 39947 |
EC Number: | 2.4.1.242 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 68.427 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.851 | 999.000 |
% Hydrophobic | % Polar |
---|---|
48.99 | 51.01 |
According to VolSite |
HET Code: | ADP |
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Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 54.14 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-55.9538 | -9.41319 | 37.707 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | N | GLY- 100 | 3.13 | 127.87 | H-Bond (Protein Donor) |
O3B | NE | ARG- 408 | 3.49 | 134.46 | H-Bond (Protein Donor) |
O3B | NH2 | ARG- 408 | 2.84 | 170.57 | H-Bond (Protein Donor) |
O3B | CZ | ARG- 408 | 3.6 | 0 | Ionic (Protein Cationic) |
C5' | CG | ARG- 408 | 4.16 | 0 | Hydrophobic |
O5' | NZ | LYS- 413 | 2.84 | 161.55 | H-Bond (Protein Donor) |
C2' | CD1 | ILE- 490 | 3.47 | 0 | Hydrophobic |
O2' | OE1 | GLN- 493 | 3.17 | 144.5 | H-Bond (Ligand Donor) |