3.000 Å
X-ray
2012-06-28
| Name: | Granule-bound starch synthase 1, chloroplastic/amyloplastic |
|---|---|
| ID: | SSG1_ORYSJ |
| AC: | Q0DEV5 |
| Organism: | Oryza sativa subsp. japonica |
| Reign: | Eukaryota |
| TaxID: | 39947 |
| EC Number: | 2.4.1.242 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 68.427 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.851 | 999.000 |
| % Hydrophobic | % Polar |
|---|---|
| 48.99 | 51.01 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.14 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -55.9538 | -9.41319 | 37.707 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | N | GLY- 100 | 3.13 | 127.87 | H-Bond (Protein Donor) |
| O3B | NE | ARG- 408 | 3.49 | 134.46 | H-Bond (Protein Donor) |
| O3B | NH2 | ARG- 408 | 2.84 | 170.57 | H-Bond (Protein Donor) |
| O3B | CZ | ARG- 408 | 3.6 | 0 | Ionic (Protein Cationic) |
| C5' | CG | ARG- 408 | 4.16 | 0 | Hydrophobic |
| O5' | NZ | LYS- 413 | 2.84 | 161.55 | H-Bond (Protein Donor) |
| C2' | CD1 | ILE- 490 | 3.47 | 0 | Hydrophobic |
| O2' | OE1 | GLN- 493 | 3.17 | 144.5 | H-Bond (Ligand Donor) |