2.810 Å
X-ray
2012-04-07
Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Cytochrome b-large subunit |
---|---|---|
ID: | O44074_ASCSU | P92506_ASCSU |
AC: | O44074 | P92506 |
Organism: | Ascaris suum | |
Reign: | Eukaryota | |
TaxID: | 6253 | |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 38 % |
C | 54 % |
D | 8 % |
B-Factor: | 89.090 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.435 | 1998.000 |
% Hydrophobic | % Polar |
---|---|
65.03 | 34.97 |
According to VolSite |
HET Code: | RQX |
---|---|
Formula: | C15H22NO3 |
Molecular weight: | 264.340 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.96 % |
Polar Surface area: | 71.01 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-30.6086 | -21.4875 | -47.5809 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C9 | CD2 | LEU- 60 | 4.14 | 0 | Hydrophobic |
C14 | CD2 | LEU- 60 | 3.72 | 0 | Hydrophobic |
C1 | CE3 | TRP- 69 | 3.79 | 0 | Hydrophobic |
N | OG | SER- 72 | 3.17 | 167.75 | H-Bond (Ligand Donor) |
O3 | NH1 | ARG- 76 | 2.5 | 169.82 | H-Bond (Protein Donor) |
O3 | NH2 | ARG- 76 | 3.22 | 125.79 | H-Bond (Protein Donor) |
C15 | CE2 | TYR- 107 | 3.21 | 0 | Hydrophobic |
C9 | CB | PRO- 193 | 4.41 | 0 | Hydrophobic |
C8 | CB | SER- 194 | 4.27 | 0 | Hydrophobic |
C9 | CZ2 | TRP- 197 | 3.99 | 0 | Hydrophobic |
C8 | CB | HIS- 240 | 4.07 | 0 | Hydrophobic |
C8 | CD1 | ILE- 242 | 3.8 | 0 | Hydrophobic |