2.550 Å
X-ray
2012-03-26
Name: | Small heat shock protein StHsp14.0 |
---|---|
ID: | Q970D9_SULTO |
AC: | Q970D9 |
Organism: | Sulfolobus tokodaii |
Reign: | Archaea |
TaxID: | 273063 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
I | 95 % |
M | 5 % |
B-Factor: | 60.364 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.877 | 273.375 |
% Hydrophobic | % Polar |
---|---|
53.09 | 46.91 |
According to VolSite |
HET Code: | VAL_ILE_LYS_ILE_GLU |
---|---|
Formula: | C28H52N6O8 |
Molecular weight: | 600.748 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 29.43 % |
Polar Surface area: | 251.93 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 6 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 2 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 21 |
X | Y | Z |
---|---|---|
-56.4457 | 0.830429 | 14.8486 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O | NZ | LYS- 47 | 3.18 | 152.1 | H-Bond (Protein Donor) |
OXT | NZ | LYS- 47 | 3.67 | 0 | Ionic (Protein Cationic) |
N | O | ALA- 52 | 2.88 | 155.14 | H-Bond (Ligand Donor) |
CD1 | CB | ALA- 52 | 4.27 | 0 | Hydrophobic |
CG2 | CB | ARG- 53 | 4.1 | 0 | Hydrophobic |
CD1 | CD1 | LEU- 60 | 4.2 | 0 | Hydrophobic |
CG2 | CG2 | ILE- 99 | 4.16 | 0 | Hydrophobic |
CD1 | CG2 | ILE- 99 | 3.62 | 0 | Hydrophobic |
N | O | GLY- 101 | 2.7 | 154.66 | H-Bond (Ligand Donor) |
CG2 | CB | TYR- 103 | 3.7 | 0 | Hydrophobic |
CG2 | CD1 | LEU- 108 | 3.95 | 0 | Hydrophobic |
CD1 | CD1 | LEU- 108 | 4.02 | 0 | Hydrophobic |
CD1 | CD1 | ILE- 110 | 3.68 | 0 | Hydrophobic |